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   <div id="projectname">BEAGLE
   &#160;<span id="projectnumber">2.0.0</span>
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   <div id="projectbrief">An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics</div>
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&#160;<ul>
<li>beagleAccumulateScaleFactors()
: <a class="el" href="beagle_8h.html#aea0ba5ba75cda49363b82f48def77847">beagle.h</a>
</li>
<li>beagleCalculateEdgeLogLikelihoods()
: <a class="el" href="beagle_8h.html#a1622661032ea7959e985592d86a9fa77">beagle.h</a>
</li>
<li>beagleCalculateRootLogLikelihoods()
: <a class="el" href="beagle_8h.html#a967f3d7704eb53e34b091b86a7e9baee">beagle.h</a>
</li>
<li>beagleConvolveTransitionMatrices()
: <a class="el" href="beagle_8h.html#a50aff3cb6241e9fe59a0cb5c5cc29ee0">beagle.h</a>
</li>
<li>beagleCopyScaleFactors()
: <a class="el" href="beagle_8h.html#a66c460f21b89acb0ad551be0d9143133">beagle.h</a>
</li>
<li>beagleCreateInstance()
: <a class="el" href="beagle_8h.html#a8bbfa8c48d0cd2dbc8f253a51f5b777e">beagle.h</a>
</li>
<li>beagleFinalize()
: <a class="el" href="beagle_8h.html#a7c5d6a18112618e6e4955d7f7dc22617">beagle.h</a>
</li>
<li>beagleFinalizeInstance()
: <a class="el" href="beagle_8h.html#aa35df026165d96afb3a09079126666dc">beagle.h</a>
</li>
<li>beagleGetCitation()
: <a class="el" href="beagle_8h.html#aa057301859e993ba24d5b9fdc7f7ecd8">beagle.h</a>
</li>
<li>beagleGetPartials()
: <a class="el" href="beagle_8h.html#a6f698c0acaf059732079e854682ab8bb">beagle.h</a>
</li>
<li>beagleGetResourceList()
: <a class="el" href="beagle_8h.html#a389ba7c4a2e4ec083fada4b43d15df16">beagle.h</a>
</li>
<li>beagleGetSiteDerivatives()
: <a class="el" href="beagle_8h.html#a7bd7856124724dc18058935d8aaa08ec">beagle.h</a>
</li>
<li>beagleGetSiteLogLikelihoods()
: <a class="el" href="beagle_8h.html#a8de7a453b2d4a89be02f75f8e9ae9ab9">beagle.h</a>
</li>
<li>beagleGetTransitionMatrix()
: <a class="el" href="beagle_8h.html#a4054c89db17dd5cc50c0f1c077bee8c8">beagle.h</a>
</li>
<li>beagleGetVersion()
: <a class="el" href="beagle_8h.html#a7548767f2cb3af22eeaec53033b826e7">beagle.h</a>
</li>
<li>beagleRemoveScaleFactors()
: <a class="el" href="beagle_8h.html#a0703dedf208d98a4b86ea8ee0b2e358d">beagle.h</a>
</li>
<li>beagleResetScaleFactors()
: <a class="el" href="beagle_8h.html#ad0b1d6509865e06715cf96b7f5ec0b13">beagle.h</a>
</li>
<li>beagleSetCategoryRates()
: <a class="el" href="beagle_8h.html#a404a18af42b3eb11d1d7dc8c86204ce8">beagle.h</a>
</li>
<li>beagleSetCategoryWeights()
: <a class="el" href="beagle_8h.html#a9e162e36113dfd5edb1dc57c2e99e3b5">beagle.h</a>
</li>
<li>beagleSetEigenDecomposition()
: <a class="el" href="beagle_8h.html#aae27b7b658d2a30a520190915ac10ae3">beagle.h</a>
</li>
<li>beagleSetPartials()
: <a class="el" href="beagle_8h.html#a4d9587451dddf791c2b28de95b91a8aa">beagle.h</a>
</li>
<li>beagleSetPatternWeights()
: <a class="el" href="beagle_8h.html#aebbfc9e38a2dd362b0f03f29cab42ac6">beagle.h</a>
</li>
<li>beagleSetStateFrequencies()
: <a class="el" href="beagle_8h.html#aed8f0f07b5510150efe1b72df2270f4d">beagle.h</a>
</li>
<li>beagleSetTipPartials()
: <a class="el" href="beagle_8h.html#a8da6fcc385325ac71c0268ba49c91735">beagle.h</a>
</li>
<li>beagleSetTipStates()
: <a class="el" href="beagle_8h.html#a248ac2d4e93da19d4598a488545beb3a">beagle.h</a>
</li>
<li>beagleSetTransitionMatrices()
: <a class="el" href="beagle_8h.html#a72c7aac15b0cc06f03e6177ad0a161e6">beagle.h</a>
</li>
<li>beagleSetTransitionMatrix()
: <a class="el" href="beagle_8h.html#ac209b67480022546bed413034bf771a0">beagle.h</a>
</li>
<li>beagleUpdatePartials()
: <a class="el" href="beagle_8h.html#a1c6335b5efc17f331282daec82e94226">beagle.h</a>
</li>
<li>beagleUpdateTransitionMatrices()
: <a class="el" href="beagle_8h.html#a5528ac9d57faaa14947260a297496269">beagle.h</a>
</li>
<li>beagleWaitForPartials()
: <a class="el" href="beagle_8h.html#ab34345b9feb1a92a9ed247dbb93192b4">beagle.h</a>
</li>
</ul>
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